Source: python-varcode
Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Build-Depends:
 debhelper-compat (= 14),
 dh-sequence-python3,
 pybuild-plugin-pyproject,
 python3-all,
 pyensembl <!nocheck>,
 python3-memoized-property <!nocheck>,
 python3-numpy <!nocheck>,
 python3-pandas <!nocheck>,
 python3-pysam <!nocheck>,
 python3-pytest <!nocheck>,
 python3-sercol <!nocheck>,
 python3-serializable (>= 1.1.0) <!nocheck>,
 python3-setuptools,
 python3-typechecks <!nocheck>
Testsuite: autopkgtest-pkg-pybuild
Standards-Version: 4.7.4
Homepage: https://github.com/openvax/varcode
Vcs-Browser: https://salsa.debian.org/med-team/python-varcode
Vcs-Git: https://salsa.debian.org/med-team/python-varcode.git

Package: python3-varcode
Section: python
Architecture: all
Depends:
 ${python3:Depends},
 python3-serializable (>= 1.1.0),
 python3-typechecks
Suggests: python3-pysam
Description: Python library for genomic variant effect prediction
 Varcode represents genomic variants and predicts their consequences for
 transcripts, splicing, and protein sequences using Ensembl annotations.
 It supports both small sequence variants and structural variants.

Package: varcode
Architecture: all
Depends:
 ${python3:Depends},
 python3-varcode (= ${source:Version})
Description: command-line genomic variant effect prediction tools
 This package provides the varcode and varcode-genes commands. They load
 genomic variants from VCF, MAF, or JSON files, or from coordinates supplied
 on the command line, and report overlapping genes or predicted transcript
 and protein sequence consequences.
 .
 The Python library is provided by python3-varcode.
