Concept
Container
Object that contains other objects.
Concept Definition
Required Metafunctions
| Type for reading values. | |
| Type of an object that represents a position in a container. | |
| Reference type. | |
| Type of an object that is suitable to hold size information. | |
| Type of the items in the container. |
Required Functions
| Concatenate two containers. | |
| Appends a value to a container. | |
| Assigns one object to another object. | |
| Assigns value to item. | |
| Assigns value to item. | |
| The begin of a container. | |
| Begin position of object in host. | |
| The maximal length. | |
| The end of a container. | |
| End position of object in host. | |
| Access to the value. | |
| The number of items/characters. | |
| Assigns value to item. | |
| Replaces a part of a container with another container. | |
| Reference to the value. |
Implemented by
| Allows to modify arbitrary strings by specializing what differs from an origin. | |
| General purpose container for sequences. |
Used By Function
Functions
| Adds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails. | |
| Extension of seeds. | |
| Extension of seeds with score calculation. | |
| Extension of seeds with score calculation. | |
| Creates a matrix storing the number of common q-grams between all pairs of sequences. | |
| Creates a matrix storing the number of common q-grams between all pairs of sequences. | |
| Reverse an object/container in-place. |
SeqAn - Sequence Analysis Library - www.seqan.de